Sample Pair Mismatch
Author: Christophe Lambert and Greta Linse Peterson, Golden Helix, Inc.
This script compares genotype calls from NSP and STY files and calculates the correlation between the nearest markers in the two sets. If there is a high correlation, the NSP and STY markers correspond to the same person, otherwise there is a mismatch.
Recommended Directory Location
Save the script to the following directory:
*..\Application Data\Golden Helix SVS\UserScripts\Spreadsheet\Numeric\CNV_QA
Note: The Application Data folder is a hidden folder on many operating systems and its location varies between operating systems. The easiest way to locate this directory on your computer is to open SVS and go to Tools >Open Folder > UserScripts Folder. If saved to the proper folder, this script will be accessible from the Spreadsheet Numeric > CNV QA menu.
Need a Custom Script?
Need a script and don't feel you have the bioinformatics expertise to write it yourself? Click the link below to request a custom script and we'll see what we can do to help.
Request Custom Script »
What is Python?
Python is a clear and powerful object-oriented programming language, comparable to Perl, Ruby, Scheme, or Java. Integrating Python into SVS provides full programmatic access to many of the software's features enabling the augmentation of existing tools, creating entirely new ones, automation of work flows, integration with other programs and more.