Features
With VSReports, you can easily convert the output of your tertiary analysis into a customized clinical report. After you've filtered down your imported variants, simply select variants to include in the report. You are then one click away from a report that includes:
- Identifiers from dbSNP or ICGC somatic mutation catalogs
- Descriptions of gene function from OMIM
- Pathogenicity based on your past variant assessments or Clinvar
- HGVS variant names
- Exon Numbers
- Sequence Ontology
- Coverage Information
- Variant interpretations provided by the user
- Overall Test interpretation
Full Integration of OMIM
VSReports comes with OMIM, a comprehensive catalog focusing on the relationship between the phenotype and genotype of all known Mendelian disorders and over 15,000 genes. The OMIM annotation source will be deeply integrated into VSReports, and carefully curated at the phenotype, gene and variant level.
Customizable Report Templates
Reports can be branded and styled to match the documents that your lab typically produces. With tight integration to your analysis results, you can also pull in additional annotation sources relevant to the sample being tested. we are happy to work with you to design templates specific to your needs.
Modeled off ACMG Guidelines
VSReports ships with report templates that are modeled off of the ACMG guidelines. Templates for both hereditary and cancer analysis are included free of charge.
Customizable Export Formats
Reports are created as HTML documents which can be exported to a PDF with a single click. Export formats are completely customizable and can be tailored to integrate with other services that use formats like XML as their input.
The following descriptive and filterable data points will be joinable to your imported variants:
- Functional description of genes and phenotypes ready for physicians to orient themselves
- Lists of phenotypes linked to genes with supporting evidence and modes of inheritance of the phenotype (autosomal dominant, etc.)
- Paper references with relevant PubMed and direct URL Links to clinical relevant genetic resources such as testing guidelines, ontology and gene test registries
- Descriptive interpretations for variants curated from published papers with family and disease context
Use Cases
Reporting on Gene Panels
VSReports has the ability to generate clinical-grade reports...
VSReports are fully customizable, containing focused and actionable data. It is easy to differentiate primary findings from secondary findings. VS Reports ships with report templates that are modeled off of the ACMG guidelines, the de-facto gold standard for clinical reporting. There are templates available for a gene panel report and a more complex trio analysis. Our reports can be used for both hereditary and cancer analysis and are included free of charge.
Reporting on Clinical Exomes & Trios
Reports can be branded and styled to match the documents that your lab typically produces...
With tight integration to your analysis results, access to OMIM is bundled with this software. However, you can pull in additional annotation sources relevant to the sample tested leveraging our powerful and flexible data import capabilities. By default, reports are created as HTML documents which can be exported to a PDF with a single click. Export formats are completely customizable and can be tailored to integrate with other services that use formats such as XML as their input.
Recommended Learning Materials
We have a variety of supplemental learning materials to further educate anyone interested in the industry of our software solutions. Here are some of our recommended materials for you to check out related to VSReports!
eBooks
Check out our free eBooks on a variety of different topics:
Webcasts
Watch this webcast that gives a great overview of our clinical stack!
Other Resources
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VSReports in Action
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Technical Specifications
VarSeq offers flexible deployment options to match your infrastructure needs. Deploy on local workstations, servers with remote desktop access, or leverage our new "bring your own cloud" model using provided scripts for automated cloud deployment.
The software operates securely within corporate networks, supporting web proxy configurations and maintaining minimal internet connectivity requirements. Connections to Golden Helix servers are limited to essential functions like license verification and annotation updates.
See System Requirements for more details of hardware and operating systems requirements based on planned workflows.