Features
As genomic testing grows, laboratories must manage increasing volumes of sequencing data while ensuring consistent quality, compliance, and efficient workflows. VSWarehouse is a scalable, centralized platform for storing NGS variant call sets, clinical reports, and curated variant knowledge. Built on the high-performance infrastructure of the VarSeq platform, it integrates with existing analysis workflows, supports automation for high-throughput operations, and offers flexible deployment and licensing options for labs of any size.
Assessment Catalogs
Labs develop specialized knowledge about variants, genes, fusions, and other genomic elements, but this expertise is difficult to standardize, reuse, and share consistently. Without a central system, valuable insights can be lost or applied inconsistently across projects. With VSWarehouse, users can codify and create specialized institutional knowledge about variants, genes, complex mutations, or structural variants. Codifying your data allows easy inclusion or exclusion during filtering and reuse across your organization. This data can also be shared easily among team members through VSWarehouse.
Automation
As sequencing throughput increases, manual processes can slow analysis, create variability, and place heavy demands on staff resources. VSWarehouse integrates VSPipeline, an application for creating repeatable clinical workflows essential for CLIA and CAP-certified analysis. This level of automation creates a high-throughput pipeline for short and long-read genomic data. In addition, VSPipeline has access to a wide selection of curated annotation sources to ensure high-quality data and will work with your imported variants.
Licensing
Growing labs often face rising costs and inflexible pricing models. VSWarehouse offers licensing options that align with your organization’s unique operational needs. We provide a per-sample model for smaller labs seeking predictable expenses, and an unlimited site license for large-scale health systems or national programs. As sample volumes increase, capacity can be expanded seamlessly without workflow disruption, keeping costs aligned with throughput, rather than user count.
Secondary Analysis
Operating multiple sequencing platforms and analysis tools can fragment workflows and reduce overall efficiency. VSWarehouse serves as your point of truth, incorporating secondary analysis from different platforms and variant callers into a unified environment. This consolidation streamlines operations, shortens turnaround times, and ensures consistent standards are applied across all analyses, regardless of the sequencing technologies used.
Security
Sensitive genomic data requires strict security protocols that simultaneously maintain efficient user access. VSWarehouse supports Single Sign-On (SSO) through Active Directory and SAML, enabling users to log in with existing corporate credentials. Role-Based Access Control provides customizable permission settings, while isolated workspaces keep data, workflows, and catalogs securely separated across teams. A dedicated administrator dashboard makes managing resources, user access, and security configurations easy, maintaining compliance without adding operational burden.
Deployment
Different organizations face different infrastructure needs. Some require on-premises deployment to meet regulatory standards, while others rely on the scalability of the cloud. VSWarehouse accommodates both, offering the choice of highly secure on-premises installation or flexible cloud deployments. Cloud options integrate seamlessly with AWS or Azure storage to handle large data volumes efficiently. Hybrid and migration-ready configurations ensure that infrastructure can adapt as organizational needs evolve.
Partners
Golden Helix Partners with the Danish Healthcare Regions to Drive Advancements in Genomic Medicine | March 2025
Recommended Learning Materials
We have a variety of supplemental learning materials that are an excellent resource for anyone interested in the industry or our software solutions. Here are some of our recommended materials for you to check out related to VSWarehouse!
Webcasts
VSWarehouse: Enterprise-Grade Genomic Analysis Across Cloud and On-Premise Environments
Watch NowOther Resources
Explore a clinical workflow in the VarSeq or follow along with a tutorial!
VarSeq Viewer:
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VSWarehouse Tutorial:
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Request a VSWarehouse Trial
Did you know we offer complimentary trials of our software? No restricted features, no sample data - you get to try all the features of VSWarehouse with your data and see how it works!
If you are interested in a trial, please fill out the form below, and we will send you the details!
Technical Specifications
VarSeq offers flexible deployment options to match your infrastructure needs. Deploy on local workstations, servers with remote desktop access, or leverage our new "bring your own cloud" model using provided scripts for automated cloud deployment.
The software operates securely within corporate networks, supporting web proxy configurations and maintaining minimal internet connectivity requirements. Connections to Golden Helix servers are limited to essential functions like license verification and annotation updates.
See System Requirements for more details of hardware and operating systems requirements based on planned workflows.