Activate Variants by Sample Genotypes

Author: Autumn Laughbaum, GHI

This tool examines variant data and inactivates genotypic columns that do follow the specified genotypic patterns for the selected samples. The spreadsheet must contain mapped genotypic columns and the marker map must contain a reference allele field.


Activate Variants by Sample Genotypes.pyc

Download Documentation Documentation

Recommended Directory Location

Save the script to the following directory:
*..\Application Data\Golden Helix SVS\UserScripts\Spreadsheet\Select

Note: The Application Data folder is a hidden folder on many operating systems and its location varies between operating systems. The easiest way to locate this directory on your computer is to open SVS and go to Tools >Open Folder > UserScripts Folder. If saved to the proper folder, this script will be accessible from the Spreadsheet Select menu.


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Python is a clear and powerful object-oriented programming language, comparable to Perl, Ruby, Scheme, or Java. Integrating Python into SVS provides full programmatic access to many of the software's features enabling the augmentation of existing tools, creating entirely new ones, automation of work flows, integration with other programs and more.

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