Products & Modules

The SNP & Variation Suite is composed of six modules.

HelixTree

HelixTree

Population-Based Association

Find more associations with the most complete and advanced set of SNP, CNV, ROH, and regression tools.

HelixTree

CNAM

Copy Number Association Module

Detect CNVs with astonishing accuracy and perform whole genome CNV association tests.

HelixTree

PBAT

Family-Based Association

Perform family SNP and CNV associations analysis with advanced screening methods and an array of FBAT tests.

HelixTree

WGA MODULE

Whole Genome Analysis Module

Overcome the statistical and computational challenges of large-scale whole genome analysis.

HelixTree

Regression Module

Linear and Logistic Regression

Test allelic and haplotypic associations in the presence of confounding phenotypic variables.

HelixTree

SVS Viewer

Share and Collaborate with SVS

Share projects, data and results with colleagues, manipulate spreadsheets, and visualize results, for FREE!

Webcasts

Check out upcoming and archived webcast events..

Achieving Genome-Wide Success in SNP & CNV Studies. Part 1: Understanding the challenges of Genome-Wide Association Studies

February 18, 2009
Dr. Christophe Lambert explores some of the more persistent and major challenges in genome-wide association studies. Strategies to overcome them are also examined.

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Add-On Scripts

Enhance the utility of the software with the latest add-on scripts.

Download

Script Name

Author

Import CRLMM-Calls
This script imports the integer 1, 2, 3 crlmm-calls.txt file that is the result of genotype calls from CRLMM.


C. Lambert
Golden Helix

Export BEAGLE File
This script saves a spreadsheet containing genotype data and a binary column with phenotype info in the BEAGLE file format.


Jesse Dupre
Golden Helix

SEE ALL ADD-ON SCRIPTS »

Tutorials

Follow the latest step-by-step tutorials on new features and key workflows.

Copy Number Variation Analysis in SVS 7

Golden Helix SVS 7, via CNAM and HelixTree, offers several methods for identifying regions of copy number variation (CNV), visualizing copy number data, and performing association analysis on a variety of copy number covariates.

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Support

Looking for help? Find it here.

Contact Customer Support »
The Golden Helix Support Team is here to help. Feel free to get in touch!

Personal Web Meeting »
Schedule a free one-on-one meeting to learn more about SVS 7.

Knowledge Base »
Get answers to your questions fast.

Recent Publications

Peer reviewed publications in which Golden Helix and/or SVS were recently cited:

NATURE

GU Y, HENDERSON L ET AL.

Identification of IFRD1 as a modifier gene for cystic fibrosis lung disease.

NATURE GENETICS

AMOS CL et AL.

Genome-wide association scan of tag SNPs identifies a susceptibility locus for lung cancer at 15q25.1

MOLECULAR PSYCIATRY

HELLARD SL et AL.

Association between the insulin-induced gene 2 (INSIG2) and weight gain in a German sample of antipsychotic-treated schizophrenic patients: perturbation of SREBP-controlled lipogenesis...

ANIMAL GENETICS

ABATEPAULO ARR et AL.

Detection of SNPs in bovine immune-response genes that may mediate resistance to the cattle tick Rhipicephalus (Boophilus) microplus.

CLINICAL GENETICS

ASHWORTH JJ ET AL.

Polymorphisms spanning the 0N exon and promoter of the estrogen receptor-beta (ERβ) gene ESR2 are associated with venous ulceration.

TISSUE ANTIGENS

CASTELLI EC et AL.

HLA-G polymorphism and transitional cell carcinoma of the
bladder in a Brazilian population.

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