BEAGLE/BEAGLECALL Scripts Package

Author: Various GHI Staff

These scripts are for importing and exporting files from the BEAGLE and BEAGLECALL Genetic Analysis Software Packages.


Name Script Documentation
Import BEAGLE Files Download Documentation
Import BEAGLE Allelic R2 Files Download Documentation
IMport BEAGLE gprobs Files as Allelic Dosage Download Documentation
Export BEAGLE Marker File per Chromosome Download Documentation
Export BEAGLE by Chromosome Download Documentation
Export BEAGLECALL Genotype Probabilities Download Documentation
Export BEAGLE CALL Allele Signals Download Documentation
Zip File of all BEAGLE/BEAGLECALL Scripts Download All

Recommended Directory Locations

Import Scripts

Save the script to the following directory:
*..\Application Data\Golden Helix SVS\UserScripts\SVS\Import

Note: The Application Data folder is a hidden folder on many operating systems and its location varies between operating systems. The easiest way to locate this directory on your computer is to open SVS and go to Tools >Open Folder > UserScripts Folder. If saved to the proper folder, this script will be accessible from the project navigator Import menu.

Export Scripts

Save the script to the following directory:
*..\Application Data\Golden Helix SVS\UserScripts\Spreadsheet\File

Note: The Application Data folder is a hidden folder on many operating systems and its location varies between operating systems. The easiest way to locate this directory on your computer is to open SVS and go to Tools >Open Folder > UserScripts Folder. If saved to the proper folder, this script will be accessible from the Spreadsheet File menu.


Need a Custom Script?

Scripts

Need a script and don't feel you have the bioinformatics expertise to write it yourself? Click the link below to request a custom script and we'll see what we can do to help.
Request Custom Script »

What is Python?

Python is a clear and powerful object-oriented programming language, comparable to Perl, Ruby, Scheme, or Java. Integrating Python into SVS provides full programmatic access to many of the software's features enabling the augmentation of existing tools, creating entirely new ones, automation of work flows, integration with other programs and more.

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