Add-On Script

Activate Variants by Genotype Count Threshold

Author: Autumn Laughbaum, GHI

This tool scans genotypic columns and activates columns based on a user-specified count or percentage threshold of user-specified genotypes. For example, you could use this tool to activate all genotypic columns that contain at least 20% homozygous alternate variants.


Activate Variants by Genotype Count Threshold.pyc

Download Documentation Documentation

Recommended Directory Location

Save the script to the following directory:
*..\Application Data\Golden Helix SVS\UserScripts\Spreadsheet\Select

Note: The Application Data folder is a hidden folder on many operating systems and its location varies between operating systems. The easiest way to locate this directory on your computer is to open SVS and go to Tools >Open Folder > UserScripts Folder. If saved to the proper folder, this script will be accessible from the Spreadsheet Select menu.


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What is Python?

Python is a clear and powerful object-oriented programming language, comparable to Perl, Ruby, Scheme, or Java. Integrating Python into SVS provides full programmatic access to many of the software's features enabling the augmentation of existing tools, creating entirely new ones, automation of work flows, integration with other programs and more.

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