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" 'Where is the missing heritability?' is a question asked frequently in genetic research. The difficulty seems to come down to the common disease/common variant hypothesis not holding up." » Read more
TABLE OF CONTENTS
Tutorial: Copy Number Variation (CNV) Analysis
Updated: March 8, 2010
Level: Intermediate
Modules: HelixTree, CNAM, Regression
This tutorial covers a comprehensive set of CNV analysis workflows in SVS 7 focusing on methods for processing raw intensity data, performing quality assurance, identifying regions of copy number variation (CNV), visualizing copy number data, and performing association analysis on a variety of copy number covariates.
REQUIREMENTS
To complete this tutorial you will need to download and unzip the following file, which includes several datasets.
Note: If you have downloaded this file for any of the other Copy Number Variation Analysis Tutorials, you do not need to download it again.
| Download | Files | Size | Type | Description |
 |
HM_Sample_CNV_Data.zip | 500 MB | Data | Simulated phenoptye and clinical data |
Files included in the above ZIP file:
- 500K_Matching.csv - NSP and STY matching spreadsheet.
- HM_Pheno.csv - Simulated phenotype and clinical data.
- HM_500K_LogRs.dsf - Normalized log2 ratios for all 270 HapMap samples from the Affymetrix 500K array.
We hope you enjoy the experience and look forward to your feedback.
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